Bag-of-words is a commonly used text representation method for many text classification applications. However, bag-of-words representation fails to consider the context of the text because it only examines text documents based on the presence of individual words and explores relationships between texts with similar word choices (Bengfort, 2018).…

New experimental methods has resulted in increasing amount of genetic interaction data to be generated every day. Biological networks are used to store genetic interaction data gathered. Increasing amount of data available requires fast large scale analysis methods. Therefore, we address the problem of querying large biological network datasets.…

Graphs are widely used to model structures and relationships of objects in various scientific and commercial fields. Chemical molecules, proteins, malware system-call dependencies and three-dimensional mechanical parts are all modeled as graphs. In this dissertation, we propose to mine and index those graph data to enable fast and scalable search.…