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Representing DNA for Machine Learning Algorithms: A Primer on One-Hot, Binary, and Integer Encodings
Yash Munnalal Gupta; Satwika Nindya Kirana; Somjit Homchan – Biochemistry and Molecular Biology Education, 2025
This short paper presents an educational approach to teaching three popular methods for encoding DNA sequences: one-hot encoding, binary encoding, and integer encoding. Aimed at bioinformatics and computational biology students, our learning intervention focuses on developing practical skills in implementing these essential techniques for…
Descriptors: Science Instruction, Teaching Methods, Genetics, Molecular Biology
Tovar, Glomen – Biochemistry and Molecular Biology Education, 2018
A software to calculate the net charge and to predict the isoelectric point (pI) of a polypeptide is developed in this work using the graphical programming language LabVIEW. Through this instrument the net charges of the ionizable residues of the chains of the proteins are calculated at different pH values, tabulated, pI is predicted and an Excel…
Descriptors: Graduate Students, Computer Software, Biochemistry, Scientific Concepts
Sharma, Arun K.; Hernandez, Michelle; Phuong, Vinh – Journal of STEM Education: Innovations and Research, 2019
Course-based undergraduate research (CURE) is an educational paradigm to engage students in authentic research projects as part of their classroom experience. We present a course-based undergraduate research experience (CURE) for first-year students to get acquainted with the research process and apply the skills of scientific computing to…
Descriptors: Student Research, Undergraduate Students, Learner Engagement, Climate

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