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Representing DNA for Machine Learning Algorithms: A Primer on One-Hot, Binary, and Integer Encodings
Yash Munnalal Gupta; Satwika Nindya Kirana; Somjit Homchan – Biochemistry and Molecular Biology Education, 2025
This short paper presents an educational approach to teaching three popular methods for encoding DNA sequences: one-hot encoding, binary encoding, and integer encoding. Aimed at bioinformatics and computational biology students, our learning intervention focuses on developing practical skills in implementing these essential techniques for…
Descriptors: Science Instruction, Teaching Methods, Genetics, Molecular Biology
Weiss, Charles J. – Journal of Chemical Education, 2021
Scientific computing and computer literacy are increasingly important skills for chemistry students to learn, but despite this need, there is an absence of chemistry-specific texts available for teaching the subject. This article introduces a freely available textbook released under a Creative Commons license for use in an undergraduate scientific…
Descriptors: Science Instruction, Chemistry, College Science, Undergraduate Study
Procko, Carl; Morrison, Steven; Dunar, Courtney; Mills, Sara; Maldonado, Brianna; Cockrum, Carlee; Peters, Nathan Emmanuel; Huang, Shao-shan Carol; Chory, Joanne – CBE - Life Sciences Education, 2019
Next-generation sequencing (NGS)-based methods are revolutionizing biology. Their prevalence requires biologists to be increasingly knowledgeable about computational methods to manage the enormous scale of data. As such, early introduction to NGS analysis and conceptual connection to wet-lab experiments is crucial for training young scientists.…
Descriptors: Undergraduate Students, Data Analysis, Biology, Information Science
Chen, Bodong; Resendes, Monica; Chai, Ching Sing; Hong, Huang-Yao – Interactive Learning Environments, 2017
As collaborative learning is actualized through evolving dialogues, temporality inevitably matters for the analysis of collaborative learning. This study attempts to uncover sequential patterns that distinguish "productive" threads of knowledge-building discourse. A database of Grade 1-6 knowledge-building discourse was first coded for…
Descriptors: Elementary Education, Knowledge Level, Databases, Coding
Snapir, Zohar; Eberbach, Catherine; Ben-Zvi-Assaraf, Orit; Hmelo-Silver, Cindy; Tripto, Jaklin – International Journal of Science Education, 2017
Science education today has become increasingly focused on research into complex natural, social and technological systems. In this study, we examined the development of high-school biology students' systems understanding of the human body, in a three-year longitudinal study. The development of the students' system understanding was evaluated…
Descriptors: High School Students, Secondary School Science, Science Education, Biology
Harshman, Jordan; Yezierski, Ellen – Chemistry Education Research and Practice, 2015
Data-driven inquiry (DDI) is the process by which teachers design and implement classroom assessments and use student results to inform/adjust teaching. Although much has been written about DDI, few details exist about how teachers conduct this process on a day-to-day basis in any specific subject area, let alone chemistry. Nineteen high school…
Descriptors: Science Instruction, Chemistry, Secondary School Science, High Schools
Chen, Gaowei; Clarke, Sherice N.; Resnick, Lauren B. – Technology, Instruction, Cognition and Learning, 2015
Teachers can reflect on and analyze their classroom discourse to inform their instructional practice. When teachers try to do so however, they often face analytic difficulties, which include the data set (e.g., data input, data transformation, and utterances by unknown speakers), coding (e.g., coding complexity, reliability, and efficiency),…
Descriptors: Discourse Analysis, Classroom Communication, Teaching Methods, Visualization
Aydin, Sevgi – Chemistry Education Research and Practice, 2015
This is an interpretive case study to examine the teaching of an experienced science faculty who had a strong interest in teaching undergraduate and graduate science courses and nature of science specifically. It was interested in how he transformed knowledge from his experience as a scientist and his ideas about nature of science into forms…
Descriptors: Case Studies, Science Instruction, Science Teachers, College Faculty
National Center on Scaling Up Effective Schools, 2014
High school dropout, enrollment, and graduation rates are important indicators of students' college and career readiness, which in turn significantly impact both individual income levels and the overall knowledge-driven economy. Despite the long-term benefits of a high school education, much of the current literature on raising school…
Descriptors: High Schools, Educational Quality, School Effectiveness, Institutional Characteristics
Cannata, Marisa; Haynes, Katherine Taylor; Smith, Thomas M. – National Center on Scaling Up Effective Schools, 2013
What distinguishes high schools that "beat the odds" for students from traditionally lower-performing groups from schools that struggle to improve the achievement and graduation rates of these student populations? What types of programs, practices, and processes support better than expected outcomes for students at risk of failure? How…
Descriptors: High Schools, Educational Quality, School Effectiveness, Institutional Characteristics
Stamper, John, Ed.; Pardos, Zachary, Ed.; Mavrikis, Manolis, Ed.; McLaren, Bruce M., Ed. – International Educational Data Mining Society, 2014
The 7th International Conference on Education Data Mining held on July 4th-7th, 2014, at the Institute of Education, London, UK is the leading international forum for high-quality research that mines large data sets in order to answer educational research questions that shed light on the learning process. These data sets may come from the traces…
Descriptors: Information Retrieval, Data Processing, Data Analysis, Data Collection